Question

how to remove the overlap in the chromosome numbers?

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4.3 years ago

Chaimaa ▴ 260

Hello guys, I have generated a SCNA plot using an R script (gaiaCNVplot), but i found a problem in the x axis which indicate the chromosome numbers and shown in the below figure. The chromosome numbers overlap, so is there a way for the chromosome numbers to be spread out or at least legible ?

Apprecaite your help!

R • 827 views

ADD COMMENT • link updated 4.3 years ago by h.mon 35k • written 4.3 years ago by Chaimaa ▴ 260

score 2 · Accepted Answer · 2019-12-25

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4.3 years ago

Kevin Blighe 87k

Hello, the simplest thing to try is to make the use of width when you are generating the output file. For example:

pdf("out.pdf", width = 16, height = 5.5)
  <code>
dev.off()

ADD COMMENT • link 4.3 years ago by Kevin Blighe 87k

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@ Hi Kevin, i have another question: is there a possibility to lined up this figure as to the position of each chromosome ?

ADD REPLY • link 4.3 years ago by Chaimaa ▴ 260

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Hello, I am not sure what you mean?

ADD REPLY • link 4.3 years ago by Kevin Blighe 87k

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@ Hi Kevin, i mean if there is a way to lined up these chromosomes as i can compare each chromosome with any other chromosome from another stage for example visually ?

ADD REPLY • link 4.3 years ago by Chaimaa ▴ 260