Closed:Using public TCGA RNA-Seq data to classify a sample

Question

[ScubaChris]

Greetings,

I have raw RNA-Seq data from one glioblastoma patient (tumour only), which I am currently processing to get the expression profile. I need to assign this sample to a GBM category as described in https://gdc.cancer.gov/about-data/publications/gbm_2013.

Is there a way to use the Expression_signatures.xlsx file with my sample to assign it to one of the subtypes? If not, is there a quick way to do it using the Level 3 Gene Expression data, or even better, through the TCGA portal?

Thank you in advance.