Integration analysis of atac-seq, rna-seq, and methylation data at specific gene regions

Question

[maria2019]

Hi,

I have atac-seq, rna-seq, and methylation data for a cell line. I am interested to compare the patterns of these data at specific genes (about 30 genes). what would be the right way to numerically look at these data at specific gene regions and compare them? (and maybe find a pattern for the data at some genes) I have looked at these regions on IGV but am wondering if there is a better way to compare data