Question: Gene_Ontology in DAVID tool
0
gravatar for taghizadehkobra
8 weeks ago by
taghizadehkobra0 wrote:

Hi , I have done GO_Ontology in DAVID tool but not included GO terms in the result. Below is my result:

Category Term Count % P-Value Bonferroni Benjamini GOTERM_BP_DIRECT cellular protein modification process 11 1.9 7.70E-04 8.00E-01 8.00E-01

I need something like this:

Category Term Count PValue GOTERM_BP_DIRECT GO:0043547~positive regulation of GTPase activity 124 2.12E-06

Thank you in advance

genome software error • 105 views
ADD COMMENTlink modified 8 weeks ago by dsull910 • written 8 weeks ago by taghizadehkobra0
2
gravatar for dsull
8 weeks ago by
dsull910
UCLA
dsull910 wrote:

If you click the "Download File" option in your GO results, you'll get the listings with the GO term IDs (e.g. GO:0043547).

I tried it just now and it works for me (I entered MYC and KRAS, I used OFFICIAL_GENE_SYMBOL as the identifier, and I selected Homo Sapiens as the species for both the List and Background on the Functional Annotation tool on webpage: https://david.ncifcrf.gov/home.jsp ).

That said, I encourage you to use a more comprehensive, more intuitive, and more up-to-date tool such as EnrichR ( https://amp.pharm.mssm.edu/Enrichr/ ) for your GO analysis instead.

ADD COMMENTlink modified 8 weeks ago • written 8 weeks ago by dsull910

Thank you dear dsull, I got the desired results by the your way.

ADD REPLYlink written 8 weeks ago by taghizadehkobra0
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