I have used BUSCO to get orthologous genes from 50 species. After that, I have sorted the 350 common orthologous genes from 50 species. Now I want to do phylogenetic analysis with the orthologous genes. But using concatenated 350 genes for phylogeny in MrBayes or RaxML is a very time-consuming process. So I want to know is there any simulation software available to get best genes out of 350 which will give better phylogenetic signal for doing the same.