Question: Linkage disequilibrium with one sample
0
gravatar for felipead66
4 months ago by
felipead6650
felipead6650 wrote:

I have vcf files for various cultivars. Can I calculate linkage disequilibrium from a vcf file of only one cultivar or should I group them somehow?

plink19 ld • 146 views
ADD COMMENTlink modified 4 months ago by chrchang5236.9k • written 4 months ago by felipead6650
2
gravatar for chrchang523
4 months ago by
chrchang5236.9k
United States
chrchang5236.9k wrote:

Linkage disequilibrium computations require population data. The latest PLINK 2.0 build errors out if you attempt them with less than 50 samples.

ADD COMMENTlink written 4 months ago by chrchang5236.9k

I thought so. Thank you very much for your answer.

ADD REPLYlink modified 4 months ago • written 4 months ago by felipead6650
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