Entering edit mode
4.2 years ago
ccelispuga
•
0
Hi All!
I have a question in regards to the a5pipeline I am running.
Once the a5pipeline runs the contigs with IDBA, I get this error msg.
[a5_s2] Building contigs from a5test.ec.fastq with IDBA
[a5_s2] Building contigs from a5test.ec.fastq with IDBA
[a5] a5test.s2/a5test.ec.fasta has 334197532 bytes of FastA sequence data
[a5] '/Users/christinacelispuga/Desktop/a5_miseq_macOS_20160825/bin'/idba_ud500 --num_threads 4 -r a5test.s2/a5test.ec.fasta -o a5test.s2/a5test --mink 35 --maxk 150 --min_pairs 2
sh: line 1: 4354 Killed: 9 '/Users/christinacelispuga/Desktop/a5_miseq_macOS_20160825/bin'/idba_ud500 --num_threads 4 -r a5test.s2/a5test.ec.fasta -o a5test.s2/a5test --mink 35 --maxk 150 --min_pairs 2 > a5test.s2/idba.out
[a5] Previous IDBA-UD run failed. Trying again single-threaded.
sh: line 1: 4359 Killed: 9 '/Users/christinacelispuga/Desktop/a5_miseq_macOS_20160825/bin'/idba_ud500 --num_threads 4 -r a5test.s2/a5test.ec.fasta -o a5test.s2/a5test --mink 35 --maxk 150 --min_pairs 2 --num_threads 1 > a5test.s2/idba.out
[a5] Error building contigs with IDBA
Does anyone know how to fix this?