Example NGS data

Question

[ksgajula]

Hi,

I am new to analyzing NGS data and I am trying to get familiar with Cutadapt. Can anybody suggest a website where I can download an example fastq file containing several reads that I can use as the input data for Cutadapt?

Thanks for your help.

KG

[Ram]

Google would give you a bunch of links to download sample FASTQs from. What have you tried? Please invest some more effort in your problems before asking others to help you out.

[ksgajula]

Thanks for your kind reply...I did search but couldn't find. May be I didn't search it with the right terminology. Could you help me?

[Ram]

What did you search for?

Answer 1

[Prakki Rama]

Qiagen's website provides example Illumina data (fastq format) for Pseudomonas aeruginosa (616 MB). Can find the link to download data from the following link:

https://www.qiagenbioinformatics.com/support/example-data/

Can start using cutadapt on this data first.

[ksgajula]

Thank you..I really appreciate you for the link!

Answer 2

[tothepoint]

A random search for fastq file : https://www.ebi.ac.uk/ena/data/view/SRX278147 You have all the option to search according to your need.