Question: memory problem runnig multiqc --interactive
0
gravatar for Ati
9 months ago by
Ati30
Ati30 wrote:

I got the following error when I use the --interactive command option of multiqc.

Traceback (most recent call last):
File "/usr/local/bin/multiqc", line 766, in <module>
multiqc()
File "/usr/local/lib/python3.6/site-packages/click/core.py", line 764, in __call__
return self.main(*args, **kwargs)
File "/usr/local/lib/python3.6/site-packages/click/core.py", line 717, in main
rv = self.invoke(ctx)
File "/usr/local/lib/python3.6/site-packages/click/core.py", line 956, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/usr/local/lib/python3.6/site-packages/click/core.py", line 555, in invoke
return callback(*args, **kwargs)
File "/usr/local/bin/multiqc", line 560, in multiqc
util_functions.write_data_file(multiqc_json_dump, 'multiqc_data', False, 'json')
File "/usr/local/lib/python3.6/site-packages/multiqc/utils/util_functions.py", line 71, in write_data_file
print( jsonstr.encode('utf-8', 'ignore').decode('utf-8'), file=f)
OSError: [Errno 28] No space left on device

Could anyone tell me how to solve the problem?

multiqc rna-seq • 199 views
ADD COMMENTlink modified 9 months ago by genomax91k • written 9 months ago by Ati30

OSError: [Errno 28] No space left on device

Either memory or you are running out of disk space (or hitting your quota for storage). If you don't use --interactive you should still get all plots and such. Did you try that?

ADD REPLYlink modified 9 months ago • written 9 months ago by genomax91k

Thank you very much! Yes, it is a memory problem but I couldn't yet solve it! Of course, it worked without --interactive option but as I have many samples having an interactive plot will be better.

ADD REPLYlink written 9 months ago by Ati30
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