Hello. I am trying to run a blast against NR locally, and I am looking to find a way to run it as fast as I can. I recalled from my memory that I used LC_ALL=C fgrep -wf- for a "quicker" search file from one file to another, so I'm wondering if I can do something similar with the blast.
In the same line with fgrep I tried
blastp -query FILE -db LC_ALL=C /home/Protein_DataBases/nr/nr.fasta -evalue 1e-5 -outfmt 6 -num_threads 25 but it doesn't work. Does anyone knows if I can do this action??
Thank you in advance!