Question

How to do chromosome painting?

2

Entering edit mode

3.2 years ago

nimishabalan131 ▴ 20

How to do chromosome painting using Satsuma synteny?

Also how to download and visualize the result using mizbee?

genome Assembly Satsuma • 750 views

ADD COMMENT • link updated 3.2 years ago by zx8754 11k • written 3.2 years ago by nimishabalan131 ▴ 20

zx8754 · Accepted Answer · 2020-01-13

3

Entering edit mode

3.2 years ago

tothepoint ▴ 760

Hope this may help you

SatsumaSynteny -t target_genome -q query_genome -n 2 –m 8 –o output_directory

I am also waiting for this command to finish and than I will explore Mizbee.

ADD COMMENT • link updated 3.2 years ago by zx8754 11k • written 3.2 years ago by tothepoint ▴ 760