Question: How can I read .hwe file from PLINK? converting to VCF?
0
gravatar for lc_or
3 days ago by
lc_or0
lc_or0 wrote:

Hi, I am a beginner struggling with PLINK uses.

I wonder how I can visualize results from PLINK. I got a .HWE file after HWE test but can't read results... Is it impossible to convert HWE file to VCF?

Thanks for reading my question!

snp plink • 54 views
ADD COMMENTlink written 3 days ago by lc_or0

What do you mean by:

can't read results...

Output is a plain text file, use any text editor, see the manuals for more info: https://www.cog-genomics.org/plink/1.9/formats#hwe

ADD REPLYlink written 3 days ago by zx87548.8k

Thanks, zx8754!

Could you introduce me to the example of a text editor? I mean, how I can see the summary of the test, including x^2, p-value from the HWE test.

ADD REPLYlink written 3 days ago by lc_or0

I prefer Notepad++.

There are many other alternatives.

ADD REPLYlink written 3 days ago by zx87548.8k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1574 users visited in the last hour