How can I read .hwe file from PLINK? converting to VCF?

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4.3 years ago

lc_or • 0

Hi, I am a beginner struggling with PLINK uses.

I wonder how I can visualize results from PLINK. I got a .HWE file after HWE test but can't read results... Is it impossible to convert HWE file to VCF?

Thanks for reading my question!

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ADD COMMENT • link 4.3 years ago by lc_or • 0

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What do you mean by:

can't read results...

Output is a plain text file, use any text editor, see the manuals for more info: https://www.cog-genomics.org/plink/1.9/formats#hwe

ADD REPLY • link 4.3 years ago by zx8754 11k

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Thanks, zx8754!

Could you introduce me to the example of a text editor? I mean, how I can see the summary of the test, including x^2, p-value from the HWE test.

ADD REPLY • link 4.3 years ago by lc_or • 0

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I prefer Notepad++.

There are many other alternatives.

ADD REPLY • link 4.3 years ago by zx8754 11k

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