Entering edit mode
4.3 years ago
zaza.inline
•
0
Hello! I'm running stampy.py (version 1.0.28) on a HPC but after hours of running I get this error message:
"terminate called after throwing an instance of 'std::bad_array_new_length'
what(): std::bad_array_new_length
stampy: Error: Detected unexpected failure of a child -- waiting for other children to terminate"
When running the same reads and genome locally on my Mac I get this other error:
"libc++abi.dylib: terminating with uncaught exception of type std::bad_alloc: std::bad_alloc
Abort trap: 6"
Python version is 2.7.10
Any help is appreciated!
Thanks!
Giulia
For mac manual says:
The reads I am mapping are paired end Illumina (SRR8755631) and the genome is that of Parasteatoda tepidariorum (GCF_000365465.2_Ptep_2.0).
First, I have prepared the genome index and hash table with the commands:
Then, I sent the job through SLURM using this sbatch script:
Thank you