Question: How to use SingleR for annotating single-cell transcriptomics dataset with our own custom made bulk RNA data?
gravatar for A248
4 weeks ago by
A2480 wrote:

Is this possible on the latest SingleR release version (3.10)? It looks like its fairly easy to use pre-existing Bulk RNA signatures from the built-in references, but when the bulk RNA data is generated by ourselves, is this possible?

Thanks in advance!

ADD COMMENTlink modified 27 days ago by jared.andrews074.8k • written 4 weeks ago by A2480
gravatar for jared.andrews07
27 days ago by
St. Louis, MO
jared.andrews074.8k wrote:

Sure, you just have to feed it the counts (ref argument) and a vector of labels (labels argument) corresponding to each sample. Reading ?SingleR should explain pretty clearly.

ADD COMMENTlink written 27 days ago by jared.andrews074.8k
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