Question: How to use SingleR for annotating single-cell transcriptomics dataset with our own custom made bulk RNA data?
0
gravatar for A248
4 weeks ago by
A2480
A2480 wrote:

Is this possible on the latest SingleR release version (3.10)? It looks like its fairly easy to use pre-existing Bulk RNA signatures from the built-in references, but when the bulk RNA data is generated by ourselves, is this possible?

Thanks in advance!

ADD COMMENTlink modified 27 days ago by jared.andrews074.8k • written 4 weeks ago by A2480
0
gravatar for jared.andrews07
27 days ago by
jared.andrews074.8k
St. Louis, MO
jared.andrews074.8k wrote:

Sure, you just have to feed it the counts (ref argument) and a vector of labels (labels argument) corresponding to each sample. Reading ?SingleR should explain pretty clearly.

ADD COMMENTlink written 27 days ago by jared.andrews074.8k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1706 users visited in the last hour