I have a big genomic file including coordinate as below.
chr10 42383177 42384128 chr10 42384129 42385080 chr10 42385081 42386032 chr10 42386033 42386984 chr10 42386985 42387936 chr10 42387937 42388888 chr10 42388889 42389840 chr10 42389841 42390793
I would like to extract some features from UCSC like:
- GC content
- conservation score (phastCons)
- repeat fraction (RepeatMasker)
is there any way to download the whole genomic table from UCSC or any script to get those scores for my given coordinates? How can I get those features from UCSC?
Many thanks in advance!