sugesstions to optimize an abra2 command

Question

[bioguy24]

Looking to speed up abra2 and added libIntelDeflater.so and --threads 8/16. I am running diploid germline but don't see how to adjust the pruning to .10 as suggested. Anything else? Thank you :).

java -Xmx16G -jar $abra -Dsamjdk.intel_deflater_so_path=</path/to/libIntelDeflater.so> --in <bam> --out <abra.bam> --ref <fasta> --threads 8 --targets <bed>

[GenoMax]

Since this is not a very commonly referred to program here you may want to write to program author to get an answer. Please post here, if you do get a reply.

[bioguy24]

Thank you very much :).