Entering edit mode
4.3 years ago
flogin
▴
280
Hello guys, I'm with a problem to import the function NcbimakeblastdbCommandline from Bio.Blast.Applications.
This is my list of packages:
Package Version
---------------------------------- ---------
alabaster 0.7.10
anaconda-client 1.6.14
anaconda-navigator 1.8.7
anaconda-project 0.8.2
asn1crypto 0.24.0
astroid 1.6.3
astropy 3.0.2
attrs 18.1.0
Babel 2.5.3
backcall 0.1.0
backports.shutil-get-terminal-size 1.0.0
bcbio-gff 0.6.4
beautifulsoup4 4.6.0
bio 0.1.0
biopython 1.72
bitarray 0.8.1
bkcharts 0.2
blaze 0.11.3
bleach 2.1.3
bokeh 0.12.16
boto 2.48.0
Bottleneck 1.2.1
certifi 2018.4.16
cffi 1.11.5
chardet 3.0.4
click 6.7
cloudpickle 0.5.3
clyent 1.2.2
colorama 0.3.9
conda 4.5.11
conda-build 3.10.5
conda-verify 2.0.0
contextlib2 0.5.5
cryptography 2.2.2
cycler 0.10.0
Cython 0.28.2
cytoolz 0.9.0.1
dask 0.17.5
datashape 0.5.4
decorator 4.3.0
distributed 1.21.8
docutils 0.14
entrypoints 0.2.3
et-xmlfile 1.0.1
ete3 3.1.1
fastcache 1.0.2
filelock 3.0.4
Flask 1.0.2
Flask-Cors 3.0.4
gevent 1.3.0
glob2 0.6
gmpy2 2.0.8
greenlet 0.4.13
h5py 2.7.1
heapdict 1.0.0
html5lib 1.0.1
idna 2.6
imageio 2.3.0
imagesize 1.0.0
ipykernel 4.8.2
ipython 6.5.0
ipython-genutils 0.2.0
ipywidgets 7.2.1
isort 4.3.4
itsdangerous 0.24
jdcal 1.4
jedi 0.12.0
Jinja2 2.10
jsonschema 2.6.0
jupyter 1.0.0
jupyter-client 5.2.3
jupyter-console 5.2.0
jupyter-core 4.4.0
jupyterlab 0.32.1
jupyterlab-launcher 0.10.5
jupyterthemes 0.19.6
kiwisolver 1.0.1
lazy-object-proxy 1.3.1
lesscpy 0.13.0
llvmlite 0.23.1
locket 0.2.0
lxml 4.2.1
MarkupSafe 1.0
matplotlib 2.2.2
mccabe 0.6.1
mistune 0.8.3
mkl-fft 1.0.0
mkl-random 1.0.1
more-itertools 4.1.0
mpmath 1.0.0
msgpack 0.5.6
msgpack-python 0.5.6
multipledispatch 0.5.0
navigator-updater 0.2.1
nbconvert 5.3.1
nbformat 4.4.0
networkx 2.1
nltk 3.3
nose 1.3.7
notebook 5.6.0
numba 0.38.0
numexpr 2.6.5
numpy 1.14.3
numpydoc 0.8.0
odo 0.5.1
olefile 0.45.1
openpyxl 2.5.3
packaging 17.1
pandas 0.23.0
pandocfilters 1.4.2
parso 0.2.0
partd 0.3.8
path.py 11.0.1
pathlib2 2.3.2
patsy 0.5.0
pep8 1.7.1
pexpect 4.5.0
pickleshare 0.7.4
Pillow 5.1.0
pip 18.0
pkginfo 1.4.2
pluggy 0.6.0
ply 3.11
prometheus-client 0.3.1
prompt-toolkit 1.0.15
psutil 5.4.5
ptyprocess 0.5.2
py 1.5.3
pycodestyle 2.4.0
pycosat 0.6.3
pycparser 2.18
pycrypto 2.6.1
pycurl 7.43.0.1
pyflakes 1.6.0
Pygments 2.2.0
pylint 1.8.4
pyodbc 4.0.23
pyOpenSSL 18.0.0
pyparsing 2.2.0
PySocks 1.6.8
pytest 3.5.1
pytest-arraydiff 0.2
pytest-astropy 0.3.0
pytest-doctestplus 0.1.3
pytest-openfiles 0.3.0
pytest-remotedata 0.2.1
python-awk 0.0.2
python-dateutil 2.7.3
pytz 2018.4
PyWavelets 0.5.2
PyYAML 3.12
pyzmq 17.0.0
QtAwesome 0.4.4
qtconsole 4.3.1
QtPy 1.4.1
requests 2.18.4
rope 0.10.7
ruamel-yaml 0.15.35
scikit-image 0.13.1
scikit-learn 0.19.1
scipy 1.1.0
seaborn 0.8.1
Send2Trash 1.5.0
setuptools 39.1.0
simplegeneric 0.8.1
singledispatch 3.4.0.3
six 1.11.0
snowballstemmer 1.2.1
sortedcollections 0.6.1
sortedcontainers 1.5.10
Sphinx 1.7.4
sphinxcontrib-websupport 1.0.1
spyder 3.2.8
SQLAlchemy 1.2.7
statsmodels 0.9.0
sympy 1.1.1
tables 3.4.3
tblib 1.3.2
terminado 0.8.1
testpath 0.3.1
toolz 0.9.0
tornado 5.0.2
traitlets 4.3.2
typing 3.6.4
unicodecsv 0.14.1
urllib3 1.22
wcwidth 0.1.7
webencodings 0.5.1
Werkzeug 0.14.1
wheel 0.31.1
widgetsnbextension 3.2.1
wrapt 1.10.11
xlrd 1.1.0
XlsxWriter 1.0.4
xlwt 1.3.0
yahmm 1.1.3
zict 0.1.3
When I put these lines in my code:
from Bio.Blast.Applications import NcbiblastnCommandline
from Bio.Blast.Applications import NcbimakeblastdbCommandline
Returns:
Traceback (most recent call last):
File "blast_v01.py", line 21, in <module>
from Bio.Blast.Applications import NcbimakeblastdbCommandline
ImportError: cannot import name 'NcbimakeblastdbCommandline'
As we can see only the line from Bio.Blast.Applications import NcbimakeblastdbCommandline produce the error.
How can I solve this problem?
check the functions available in
Bio.Blast.Applications. Make sure that you are using correct version.