Question: How to get Positive Control gut or Vaginal microbiome dataset
0
gravatar for eli_bayat
9 months ago by
eli_bayat20
eli_bayat20 wrote:

Hi,

I am working on a new filtering method to remove spurious taxa, and I want to validate my method by applying it on Mock community data. I am looking for a dataset for which I know how many true signal (True Taxa) I have versus noise (contaminant,...). Any help to get this dataset would be appreciated.

ADD COMMENTlink modified 7 months ago by Biostar ♦♦ 20 • written 9 months ago by eli_bayat20
1

Only mock community datasets I'm aware of are: https://lomanlab.github.io/mockcommunity/

I don't know if these are any use to you.

ADD REPLYlink written 9 months ago by Joe18k
1

There's another mock community here: https://www.nature.com/articles/s41467-018-05555-0

ADD REPLYlink written 9 months ago by Asaf8.4k
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