how to find the conserved region in two or more genomes

Question

[zhangdengwei]

Dear all,

I'd like to find the conserved region in several genomes with FASTA format, what is the best way to pull off it? Thanks in advance!!!

Answer 1

[onestop_data]

I used Mauve in the past. It should be able to visualize and extract the conserved regions between the two genomes.

[zhangdengwei]

Thanks. I found Mugsy was competent for this. I will try to use Mauve later.