Recs for what to use for analyzing IBS sharing (from phased, imputed VCFs)?
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4.2 years ago
devenvyas ▴ 740

I have imputed GZ.VCFs from Beagle 4.0 based on some ancient DNA VCFs (24 individuals). Beagle phased the genotypes in their output.

I am looking to do some IBD tract sharing analyses between 24 samples. Does anyone have recommendations on what software package to use for the imputation?

IBD • 585 views
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