Question: Input data in GAGE Analysis
gravatar for francesca3
10 weeks ago by
francesca320 wrote:

Hi everyone. I'm trying to run GAGE analysis but I'm having problems in understanding which kind of data I should use as input. I don't have access to all the previous analyses, but I just have an excel resulting from EdgeR analysis which has the TPM, the RPKM, the logCPM, the logFC and the FC. I tried to use the TPM, the logFC and the FC but in all cases I obtain not significant pathways. It seems strange to me becuase all other analyses gave me significance.

gage rna-seq • 89 views
ADD COMMENTlink modified 10 weeks ago • written 10 weeks ago by francesca320

I think I should use the option rank.test=TRUE..

ADD REPLYlink written 10 weeks ago by francesca320
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