Comparative analysis of experimental and control data from BS seq run
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15 months ago
kspata ▴ 70

Hi All,

I have one control sample and 3 experimental samples sequenced on HiSeq using Bisulfite sequencing protocol. I aligned the reads to the hg38 genome and performed methylation calls using standard Whole Genome Bisulfite bismark pipeline.

I wish to perform comparative analysis between experimental and control set. I want to know which CpG sites were methylated or not between these groups and annotate those sites.

I have the BAM files and methylation call files from this experiment. What tool can I use to perform above analysis.

Thanks in advance!!

BS seq CpG Annoattion Bismark • 306 views
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