Question: chromosomal distribution with sequence data
1
gravatar for shwetamgr1
9 weeks ago by
shwetamgr10
shwetamgr10 wrote:

how can i extract chromosomal distribution for selected gene, when i have genome, gene, .gff and protein data. how to locate genes on chromosom.

ADD COMMENTlink modified 9 weeks ago by zx87549.1k • written 9 weeks ago by shwetamgr10
1

I honestly think that significant piece of information is missing from this question...What is "chromosomal distribution"?

ADD REPLYlink written 9 weeks ago by German.M.Demidov1.5k

If you're referring to distribution of reads across specific regions (i.e. coverage/depth) in a BAM file, you can try mosdepth.

To locate genes on a chromosome, you can use the genomic coordinates in the .gff file you have.

ADD REPLYlink written 9 weeks ago by newbio1780
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