Can anyone please provide help with annotating a draft genome of a novel Trichomonad? Lots of data available for close relatives.
Since you added maker as a tag you obviously know about that program. It would probably be the best bet to start with.
You could try GenSAS. It has all the tools needed to do a de-novo annotation. It uses BRAKER instead of MAKER, but therefore everything is integrated into a single web-frontend with a step-by-step work-flow.
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