Question

Download TCGA Published data

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4.2 years ago

rjit17 • 0

The TCGA paper reported 42 WGS data for Glioblastoma cancer. I am trying to get those data but unable to find the data on the TCGA portal. Could some one please help me out?

Thanks

WGS TCGA • 617 views

ADD COMMENT • link updated 4.2 years ago by newbio17 ▴ 360 • written 4.2 years ago by rjit17 • 0

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TCGA data is now available via GDC portal. Some data may require approval to download.

ADD REPLY • link 4.2 years ago by GenoMax 141k

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In TCGA GDC portal, the WGS data for gliomas is not present in TCGA program. But its showing in two other programs (CPTAC and HCMI).

ADD REPLY • link 4.2 years ago by rjit17 • 0

score 2 · Accepted Answer · 2020-01-27

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4.2 years ago

newbio17 ▴ 360

Have you tried their legacy repository?

GDC Legacy Repository

You may want to play around with the filters, but it seems like they have BAM files you can download (restricted access).

ADD COMMENT • link 4.2 years ago by newbio17 ▴ 360