Question: How extract gene TPM from GTEx?
0
gravatar for star
5 months ago by
star240
Netherlands
star240 wrote:

I would like to know, is there any way to download Gene TPM data from GTEX from different part of the Brain?

I have downloaded 'GTEx_Analysis_2017-06-05_v8_RNASeQCv1.1.9_gene_tpm.gct.gz' an 'GTEx_Analysis_v8_Annotations_SampleAttributesDD.xlsx' files https://www.gtexportal.org/home/datasets, but I do not know how can I separate brain-related data?

rna-seq gene_expression gtex • 383 views
ADD COMMENTlink modified 5 months ago by H.Hasani920 • written 5 months ago by star240
1
gravatar for H.Hasani
5 months ago by
H.Hasani920
Freiburg, Germany
H.Hasani920 wrote:

You need GTEx_Analysis_v8_Annotations_SampleAttributesDS.txt instead of

GTEx_Analysis_v8_Annotations_SampleAttributesDD.xlsx

the one you are using is meant to describe the columns of the actual "sampleAttributes" table

ADD COMMENTlink modified 5 months ago • written 5 months ago by H.Hasani920
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