looking somatic variants interpreter, AS CKB database
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2.5 years ago
J.F.Jiang ▴ 880

Hi,

After calling somatic variants from tumor samples against normal ones, we still get a lot of true somatic variants that require variants-drug interpretations.

CKB database offers lots of high level annotations, as well as those pre-clinic ones, which can largely provide comprehensive actionable drug-able information.

However, CKB database did not provide API service, since its commercial mode.

Is there any similar comprehensive database, since our aim is to provide/integrate API/WEB service to the workflow.

--PS Other databases listed in https://github.com/seandavi/awesome-cancer-variant-databases have been tried, but none of them perform as CKB.

ckb somatic interpreter • 446 views
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