Question: refRANK error: Assembly_genomic.fna contains multiple FASTA entries
0
gravatar for smccarthy1995
9 months ago by
smccarthy19950 wrote:

Hi

I'm using refRANK to determine the most suitable reference genome to use for downstream analysis on some fastq STEC sequences. I downloaded around 70 STEC genomes from NCBI, transferred them to HPC and unzipped the tar file so they are now in genomic.fna format. However, each time I run the script its returning an error saying Assembly_genomic.fna contains multiple FASTA entries. Anyone have any ideas on how to solve this? Any advice would be much appreciated. The script is outlined below.

module load python3.7/i2

python refrank.py --fastq *.fastq.gz --ref *.fna

software error • 148 views
ADD COMMENTlink written 9 months ago by smccarthy19950
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1243 users visited in the last hour