how to use trimal to trim codon sequences
Entering edit mode
2.5 years ago
Nunu ▴ 10

I'm at the stage of trimming my codon sequences for codeml and I want to trim it using Trimal.

However, I can't find any option in trimal to indicate the format of the sequences. Alternatively, Trimal can align for protein sequences, but there is no option to get which sites were trimmed out, which I could use to trim my corresponding nucleotide sequences.

I have also considered using Guidance, but it is much slower and the names were changed. Please, any help on this?

alignment trimAl codeml • 901 views

Login before adding your answer.

Traffic: 1280 users visited in the last hour
Help About
Access RSS

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6