How to convert 10X data to do psedotime analysis using Monocle. All the tutorials in Monocle point to cellranger kit which has been deprecated. I followed - https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/output/matrices and https://kb.10xgenomics.com/hc/en-us/articles/360023793031-How-can-I-convert-the-feature-barcode-matrix-from-Cell-Ranger-3-x-to-a-CSV-file-?source=search to get to a matrix. Bu I am not sure if this is the right way?
Also there is an option to convert data from Seurat object to Monocle newCellDataSet object?
Anyone done this before?