Question: NGS-Statistics Analysis (mapping and file formating)
1
gravatar for safiq713
7 months ago by
safiq7130
safiq7130 wrote:

Deal all some can help me two things

I want to cheek my RAD data mapping percentage, as I know i can do that with $ samtools flagstat (........bam file). I want to cheek all the sample with bash command and save it in a text file, how can I that?

Second, i call my snps with bcf tools, so got output as .bcf format; how can convert it to Structure format (.str) or other useful format, suggestion please,

How can I explore inside this .bcf file?

thanks a lot for your kind help and suggestion.

snp next-gen • 171 views
ADD COMMENTlink modified 7 months ago by ATpoint38k • written 7 months ago by safiq7130
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