I installed snakepipes through conda and saw that all dependencies were installed (star, hisat...). However, when I run the pipeline (for instance) createIndices, it throws an error "/bin/bash/ command not found" for several instances.
snakemake --snakefile /home/nagaraap/Downloads/Softwares/Anaconda/yes/envs/snakePipes/lib/python3.7/site-packages/snakePipes/workflows/createIndices/Snakefile --configfile Indices_defaults.yaml --cores 10
What is the solution for this ?
Thanks in advance.