Question: Tools for detection of surface proteins in bacteria
0
gravatar for agata88
9 months ago by
agata88800
Poland
agata88800 wrote:

Hi all!

Do you recommend any tool that can predict surface proteins in selected bacteria strain e.g. Escherichia coli?

Many thanks for any suggestions,

Best, Agata

proteins bacteria • 181 views
ADD COMMENTlink modified 9 months ago by kapsakcj60 • written 9 months ago by agata88800
1
gravatar for kapsakcj
9 months ago by
kapsakcj60
USA/Atlanta
kapsakcj60 wrote:

Usually, these types of tools are specific to an organism if you are not looking for a general annotation tool, like Prokka, which would likely annotate surface protein genes.

For E. coli there is

I'm sure there are more out there, but this is a good start.

ADD COMMENTlink written 9 months ago by kapsakcj60

Thanks! I will try that tools. Best, Agata

ADD REPLYlink written 9 months ago by agata88800
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