Entering edit mode
4.2 years ago
cristianrohr768
▴
30
Hello, i have one DNA MSA
Everything is were i expect to be, except for the second sequence, it's forced to be aligned in the ends. I tried several things (gapopen and extent values, local alignment) but i cannot find the best combination of paremeters in t_coffee to solve this,
thanks
You may end up having to manually edit the alignment to fix this. That is fine to do as long as it is within reason.