Question: Demovir: Taxonomic Classification of Viral Particle
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gravatar for vishalchanda364
5 months ago by
vishalchanda36420 wrote:

Hello, I was doing this step of Taxonomic Classification using the Demovir. I followed all the steps given in [1] but then, in this step /path_to_demovir/demovir.sh input.fasta threads the command is not running properly,

The error I am getting is:

sort: cannot read: trembl_ublast.viral.txt: No such file or directory

rm: cannot remove ‘AA.fasta’: No such file or directory

rm: cannot remove ‘trembl_ublast.viral.txt’: No such file or directory

Error in read.table(file = file, header = header, sep = sep, quote = quote,  : 

  no lines available in input

Calls: read.delim -> read.table
Execution halted

Please if anyone can help me in knowing this error so that I can troubleshoot this.?

sequencing alignment next-gen • 209 views
ADD COMMENTlink modified 3 months ago by Biostar ♦♦ 20 • written 5 months ago by vishalchanda36420
1

Please read the manual. Download the reference files, format them and keep them in correct place.

ADD REPLYlink written 5 months ago by cpad011213k

okay Thank you so much.!!

ADD REPLYlink modified 5 months ago • written 5 months ago by vishalchanda36420
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