Split synchronized file
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4.4 years ago

Hii, I have a synchronized file (output from popoolation2 tool using its feature mpileup2sync.jar). And i had merged 21 synchronized files of various breeds for downstream analysis. Now i want a single synchronized file from it. Please someone guide me how to extract/separate/split that merged sync file to get desired sync of only single breed. Kindly assist me.

Thanks in advance

sync file popoolation2 tool ubuntu • 794 views
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Please try the following strategies:

  1. Look at the sync file and understand what each column means (this post might help)
  2. See how you can use awk or cut to extract specific columns from a delimited file
  3. Figure out how to use the tools and strategies to get the result you need.
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Thank you so much. I will surely try this.

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