Hi all,
this will be my first question here :)
i have an alignement file generated using Clustalx (around 20 species)
i need to parse this file using biopython in order to get for each position in the alignement the substitution matrix.
is this can be done??? and how??
thank you.
Hi, thank you for your answer, i already now how to do this, but i'm new to python and biopython, and i don't know to deal with such things, can you point me on how to do this?? or is it possible to get the substitution matrix using another sofrware and then use it in the script?? (PHYML oe Mr.Bayes)