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• Conditional Probability Model for a Bacterial Species/Genus
  I would like to try and create a statistical model using conditional probability for a bacterial ...
• Probability of finding a common sub-sequence of at least 'k' nucleotides between two sequences.
  Suppose we have two random sequences A and B of **L nucleotide** each. What is the probability to...
• protein K-mer connection
  Hello everyone, I came across a problem in my work and would be gratef...
• Probability Of Finding A Dna Sequence In A Window
  Greetings, A friend asked me what is the probability of observing a 7-mer in a 10kb genomic stre...
• Calculate if the co-occurring of two TFBSs is higher than one would expect by chance within 1000bp of each other
  Hi, How could I calculate if the co-occurring of two TFBSs is higher than one would expect by ch...
• How To Compare All The K-Mers Of A Given Length With All The K-Length Sub Strings Of A Dna Sequence?
  if you have a set of k-mers of a given length, how you can compare each k-mer with each k-length ...
• Probabilities and statistical significance of a specific kmer frequency
  Hello. I'm wondering if there is any way to determine if the frequency of a specific k-mer (insi...
• Pick highest quality fastq reads
  I am familiar with many trimmers and quality control software, but I don't think I came across so...
• Randomly sample motifs from reference sequence
  I want to randomly sample 'n' number of sequence motifs of length 'k' from the reference sequence...
• Generating All K-Mers Having N Mismatch Positions To A Kmer Using C/C++
  For any k and n (positive integer values ), there are A=k C n possible k-mers having a mismatch o...
• Genome Size Estimation
  Recently I read a paper where they estimate their genome size by this formula: `G = k-mer number/...
• How to count and compare k-mer count vectors (and print the top ten highest contributions)?
  Hello For a project I got two FASTA samples of amino acid sequences. I should write a function ...