Entering edit mode
4.2 years ago
sebabiokr
▴
10
Hi
We have performed GBS on a total of 17 species including subspecies, found a total of 14k SNPs to differentiate all the species. However, I would like to filter species-specific SNPs, for validation and their application. I have tested VCFtools (vcf-contrast) methods with vcf file as suggested but no method found suitable to filter SNPs.
Any suggestion from expert are most welcome
TIA
Seba
