Question: How to caracterize single point mutation (or editing) in RNAseq?
0
gravatar for silas008
6 weeks ago by
silas008100
Brazil
silas008100 wrote:

Hello, guys.

I found some single point mutation (or RNA editing, I don't know) in my RNAseq. I want to classify those alterations... I mean, I want to know every position where they happen and teh type of alteration.

What is the best way to do that? Is it possible to use GATK (Broad Institute) to analyse this kind of data (even though it was not properly created for RNAseq analysis)?

Thank very much for any help

gatk rnaseq • 89 views
ADD COMMENTlink written 6 weeks ago by silas008100
1

Is it possible to use GATK (Broad Institute) to analyse this kind of data (even though it was not properly created for RNAseq analysis)?

There is a GATK workflow specifically for RNA-seq: https://gatk.broadinstitute.org/hc/en-us/articles/360035531192-RNAseq-short-variant-discovery-SNPs-Indels-

ADD REPLYlink written 6 weeks ago by igor9.8k

Thank you very much, man.

ADD REPLYlink written 5 weeks ago by silas008100
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1255 users visited in the last hour