Question: how to plot the genotype of every SNP
0
gravatar for Victor
9 months ago by
Victor10
Australia
Victor10 wrote:

Hi,

According to the post of Kevin Blighe, A: B allele frequency SNP array

I am wondering how to plot the genotype of every SNP for a single sample. Are there any R-packages can be used?

plot snp genotype allele R • 182 views
ADD COMMENTlink modified 9 months ago by AsoInfo300 • written 9 months ago by Victor10
1
gravatar for AsoInfo
9 months ago by
AsoInfo300
Bonn, Germany
AsoInfo300 wrote:

It depends on your input file format. Haploview can be used for showing the genotypes of SNP's along with the LD plot.

ADD COMMENTlink written 9 months ago by AsoInfo300
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1652 users visited in the last hour