Question: 'NA's under Gene Names & Gene Symbols : Differential expression Analysis of TCGA data using edgeR
gravatar for fawazfebin
5 months ago by
fawazfebin100 wrote:


I was performing a differential expression analysis on TCGA RNA-seq data using edgeR. The results of differential expression analysis has NAs under Gene names and Gene symbols. The EntrezID corresponding to it doesnt not give a valid Gene name. What could be wrong? The following command was run for annotating the gene expression data with Entrez ID.

gnsOXP_2 <- select(, keys=rownames(matrix_OXP_2),columns=c("SYMBOL","GENENAME"), keytype="ENTREZID")

'select()' returned 1:1 mapping between keys and columns

Great thanks in advance.

ADD COMMENTlink written 5 months ago by fawazfebin100
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 657 users visited in the last hour