RNAfold discriminant error
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2.6 years ago

Anyone knows what the error below in RNAfold means and how to circumvent it (google does not seem to know)?

ERROR: Unexpected large magnitude discriminant

RNAfold • 712 views
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it may help if you can provide a reproducible example

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I am basically running the command RNAfold -p -d2 --noLP --noDP input.fa -j10 -o output, where the input.fa is a large file with ~1500 lncRNAs (not sure if I can share the file).

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you can check if one specific line is causing the problem, by using subsets of the input file