how to find the resources of practising the basic genome assembly
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4.2 years ago
t4192 ▴ 20

I want to do some basic genome assembly on my own laptop computer. For example, assembling the E.coli genome from the NGS raw reads data. Which website can I get the basic genome assembly pipeline tutorial and the raw data as well? I have some NGS knowledge and Linux command line skill. I just want to walk through a real project.

next-gen • 594 views
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This looks like a clear source for learning assembly with SPAdes. SPAdes comes with some test E. coli data that you could use.

If you want some real E. coli data here is a recent PacBio Sequel dataset.

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