Question: Transforming MEGAN output with Krona
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gravatar for nisrinalulu
7 months ago by
nisrinalulu10
nisrinalulu10 wrote:

Dear Everyone,

I hope you all doing well. I have a question for using Krona with MEGAN output. I already export csv from MEGAN with taxon_name to taxon_id with tab separator to input that csv file in Krona using ktImportTaxonomy https://github.com/marbl/Krona/wiki/Importing-from-supported-tools

I run ktImportTaxonomy with this command line:

ktImportTaxonomy -t 2 -s 3 Healthy_A.txt -o Healthy_A.html

and then I got this message:

Loading taxonomy...
Taxonomy not found in /home/lulunisrna/anaconda3/opt/krona/taxonomy. Was updateTaxonomy.sh run? at /home/lulunisrna/anaconda3/opt/krona/scripts/../lib/KronaTools.pm line 1376.

How to solve this problem? I used KronaTools 2.7 and installed it trough conda.

Thank you for your help.

Regards,

Lulu

megan metagenomics krona • 264 views
ADD COMMENTlink modified 4 months ago by Biostar ♦♦ 20 • written 7 months ago by nisrinalulu10

Was updateTaxonomy.sh run?

ADD REPLYlink written 7 months ago by cpad011214k

I didn't do anything after install Krona via conda

ADD REPLYlink written 7 months ago by nisrinalulu10
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