A reference small RNA transcriptome
0
2
Entering edit mode
20 months ago
ababaian ▴ 50

Hey all,

I'm am analyzing small RNA (<200 nt) species in human. I have found many databases such as RNAcentral and RFAM which contain a good comprehensive set of sRNA, but they often contain duplicates and/or sequences present in one database but not the other.

Is there a standardized reference set of small RNA in humans which contains the full diversity of sRNA such as tRNA, miRNA, piRNA, vtRNA, snoRNA, snRNA, ribozymes etc... I can obviously scrap one together from said databases this isn't an easily reproducible solution, and everyone seems to be using their own references so comparing across analyses is challenging.

RNA-Seq small RNA • 406 views
ADD COMMENT

Login before adding your answer.

Traffic: 1841 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6