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Answer: ISCN annotation for SV/CN VCF files
by
princessmaryanabdullahi
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**vvvvvv**Hi
> `***Blockquote***`
Iam maryan
High school
----------
##
Answer: ISCN annotation for SV/CN VCF files
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princessmaryanabdullahi
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Hi
Iam maryan
High school
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You can use seqtk to find gaps in a fasta
https://github.com/lh3/seqtk
seqtk gap
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this is names.dmp:![names.dmp][1]
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[2]: /media/i…
Comment: Filter BAM to keep only alignments at an interval, ignoring reads spliced over
by
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see also : https://www.biostars.org/p/9537698/ ; https://www.biostars.org/p/9464312/ ; https://www.biostars.org/p/417123/
Comment: Filter BAM to keep only alignments at an interval, ignoring reads spliced over
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what's the gray section ? it's the read you want ? do you only want the reads that end at the splice event (single point location) ?
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yes if there is more than one sample genotyped.
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Is it typical to observe such a profile in the context of diploid organism ?
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