CNV analysis from exome data

Question

[vishal]

Hello Everyone,

I am Vishal, I need some help in CNV analysis from exome data.

Can anyone please suggest me how to detect cnv from exome data and open source software.

Please help me out. Thank you

[German.M.Demidov]

It depends on which CNVs you want to detect - germline, tumor-normal pairs, tumor only, trio calling. What is your organism of interest, how many samples do you have (prepared with the same enrichment kit), etc.

Answer 1

[Pierre Lindenbaum]

• Whole Exome CNV tools
• CNV calling from exome sequencing data with a low number of samples
• CNV analysis tool on exome data for NGS
• What Are The 'Copy Number Detection' Tools Out There For Exome Capture Ngs Data.
• ...