creating interactive plots with bigPint in a DESeq2 analysis
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Entering edit mode
2.8 years ago
Assa Yeroslaviz ★ 1.7k

I have found the bigPint package in bioconductor recently and found it very helpful to plot the data for QC reasons. The vignettes are very good made and the package is very neat, but unfortunately they are all working with edgeR. Even though it says they can also run with a DESeq object, there is no example of such an analysis.

I was wondering if the authors of this package can also add an example with DESeq2 workflow. Or at least mention what columns of the deseq object are needed in creating the plots.

thanks

bigPint deseq2 plots RNA-Seq • 753 views
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Entering edit mode
2.7 years ago
suzuBell ▴ 60

Hello Assa Yeroslaviz. Thank you for this suggestion. We added reproducible example analyses and more detailed explanations of columns using DESeq2. You can see more information here.