Question: creating interactive plots with bigPint in a DESeq2 analysis
1
gravatar for Assa Yeroslaviz
4 months ago by
Assa Yeroslaviz1.3k
Munich
Assa Yeroslaviz1.3k wrote:

I have found the bigPint package in bioconductor recently and found it very helpful to plot the data for QC reasons. The vignettes are very good made and the package is very neat, but unfortunately they are all working with edgeR. Even though it says they can also run with a DESeq object, there is no example of such an analysis.

I was wondering if the authors of this package can also add an example with DESeq2 workflow. Or at least mention what columns of the deseq object are needed in creating the plots.

thanks

bigpint rna-seq plots deseq2 • 155 views
ADD COMMENTlink modified 11 weeks ago by suzuBell60 • written 4 months ago by Assa Yeroslaviz1.3k
2
gravatar for suzuBell
11 weeks ago by
suzuBell60
suzuBell60 wrote:

Hello Assa Yeroslaviz. Thank you for this suggestion. We added reproducible example analyses and more detailed explanations of columns using DESeq2. You can see more information here.

ADD COMMENTlink written 11 weeks ago by suzuBell60
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