Question: uploading the files to the cloud
gravatar for Sara
4 weeks ago by
Sara90 wrote:

I am trying to upload some file on BaseSpace cloud using this command:

/usr/local/bin/bs upload dataset -p 154258118 myfile.fastq.gz

but I am getting this error:

ERROR: *** Invalid filename: myfile.fastq.gz ***

do you know how to fix the problem?

rna-seq • 76 views
ADD COMMENTlink modified 4 weeks ago by h.mon29k • written 4 weeks ago by Sara90

The error suggests that there's no file called "myfile.fastq.gz" in your current working directory.

ADD REPLYlink written 4 weeks ago by Devon Ryan94k
gravatar for h.mon
4 weeks ago by
h.mon29k wrote:

You have to follow Illumina fastq file naming conventions, so your file should be named something like myfile_S1_L001_R1_001.fastq.gz.

ADD COMMENTlink written 4 weeks ago by h.mon29k
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