Question: uploading the files to the cloud
0
gravatar for Sara
8 months ago by
Sara130
Sara130 wrote:

I am trying to upload some file on BaseSpace cloud using this command:

/usr/local/bin/bs upload dataset -p 154258118 myfile.fastq.gz

but I am getting this error:

ERROR: *** Invalid filename: myfile.fastq.gz ***

do you know how to fix the problem?

rna-seq • 131 views
ADD COMMENTlink modified 8 months ago by h.mon31k • written 8 months ago by Sara130
2

The error suggests that there's no file called "myfile.fastq.gz" in your current working directory.

ADD REPLYlink written 8 months ago by Devon Ryan97k
1
gravatar for h.mon
8 months ago by
h.mon31k
Brazil
h.mon31k wrote:

You have to follow Illumina fastq file naming conventions, so your file should be named something like myfile_S1_L001_R1_001.fastq.gz.

ADD COMMENTlink written 8 months ago by h.mon31k
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